DisGeNET - a database of gene-disease associations

List of shared variants

Liver and Intrahepatic Biliary Tract Carcinoma, C0279000

Disease: Malignant neoplasm of liver

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs3787016	POLR2E	0.677	0.280	19	1090804	intron variant	A/G	snv		0.78	24
rs3811741	PLK4	0.882	0.080	4	127882004	intron variant	G/A	snv		0.74	3
rs1800797	IL6 ; IL6-AS1 ; STEAP1B	0.605	0.800	7	22726602	non coding transcript exon variant	A/G	snv		0.72	43
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs1800795	IL6-AS1 ; IL6 ; STEAP1B	0.494	0.840	7	22727026	intron variant	C/G	snv		0.71	140
rs230525	NFKB1	0.882	0.080	4	102537720	non coding transcript exon variant	G/A	snv		0.69	4
rs1800469	B9D2 ; TGFB1	0.547	0.760	19	41354391	intron variant	A/G	snv		0.69	78
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs2241715	TGFB1	0.851	0.120	19	41350981	5 prime UTR variant	A/C	snv		0.68	4
rs230496	NFKB1	0.882	0.080	4	102567334	intron variant	G/A	snv		0.59	3
rs1682111	ACYP2	0.742	0.240	2	54200842	intron variant	A/T	snv		0.56	13
rs2244444	ARHGEF10L	0.882	0.080	1	17520426	intergenic variant	C/T	snv		0.55	3
rs3212948	ERCC1	0.776	0.160	19	45421104	intron variant	G/C	snv		0.53	10
rs843720	ACYP2 ; LOC105374610	0.752	0.280	2	54283523	intron variant	T/G	snv		0.52	10
rs4024	AFP	0.827	0.120	4	73435667	intron variant	G/A	snv		0.52	7
rs4444903	EGF	0.630	0.360	4	109912954	5 prime UTR variant	A/G	snv		0.51	35
rs6713088	ACYP2	0.763	0.200	2	54118332	intron variant	C/G	snv		0.48	9
rs4073	CXCL8	0.566	0.800	4	73740307	upstream gene variant	A/T	snv		0.46	64
rs1801394	FASTKD3 ; MTRR	0.531	0.840	5	7870860	missense variant	A/G	snv	0.47	0.45	101
rs843706	ACYP2 ; TSPYL6	0.807	0.160	2	54253232	3 prime UTR variant	C/A	snv		0.42	6
rs843711	ACYP2	0.790	0.200	2	54251980	intron variant	C/T	snv		0.41	7
rs187115	CD44	0.695	0.320	11	35154612	intron variant	T/C	snv		0.37	22
rs6983267	PCAT1 ; CCAT2 ; CASC8 ; POU5F1B	0.578	0.440	8	127401060	non coding transcript exon variant	G/T	snv		0.37	62
rs230530	NFKB1	0.882	0.080	4	102532823	intron variant	A/G	snv		0.37	4